NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
23,418.1 |
| Mean read quality |
18.5 |
| Median read length |
10,626.0 |
| Median read quality |
24.3 |
| Number of reads |
786,114.0 |
| Read length N50 |
50,928.0 |
| STDEV read length |
29,467.2 |
| Total bases |
18,409,271,988.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q10 |
763497 (97.1%) 18047.5Mb |
| >Q15 |
716221 (91.1%) 17293.6Mb |
| >Q20 |
609514 (77.5%) 14804.5Mb |
| >Q25 |
330433 (42.0%) 7364.8Mb |
| >Q30 |
34823 (4.4%) 99.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
45.1 (312) |
| 2 |
45.0 (293) |
| 3 |
45.0 (330) |
| 4 |
44.4 (611) |
| 5 |
44.3 (469) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
471387 (23.1) |
| 2 |
417050 (22.0) |
| 3 |
404965 (25.6) |
| 4 |
394461 (22.0) |
| 5 |
392376 (16.3) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
23,419.1 |
| Mean read quality |
18.5 |
| Median read length |
10,627.0 |
| Median read quality |
24.3 |
| Number of reads |
786,081.0 |
| Read length N50 |
50,928.0 |
| STDEV read length |
29,467.4 |
| Total bases |
18,409,271,788.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q10 |
763464 (97.1%) 18047.5Mb |
| >Q15 |
716188 (91.1%) 17293.6Mb |
| >Q20 |
609481 (77.5%) 14804.5Mb |
| >Q25 |
330400 (42.0%) 7364.8Mb |
| >Q30 |
34790 (4.4%) 99.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
45.1 (312) |
| 2 |
45.0 (293) |
| 3 |
45.0 (330) |
| 4 |
44.4 (611) |
| 5 |
44.3 (469) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
471387 (23.1) |
| 2 |
417050 (22.0) |
| 3 |
404965 (25.6) |
| 4 |
394461 (22.0) |
| 5 |
392376 (16.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots