NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
26,161.7 |
| Mean read quality |
18.7 |
| Median read length |
14,066.0 |
| Median read quality |
24.3 |
| Number of reads |
701,929.0 |
| Read length N50 |
51,048.0 |
| STDEV read length |
30,035.9 |
| Total bases |
18,363,660,912.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q10 |
682926 (97.3%) 18003.6Mb |
| >Q15 |
641723 (91.4%) 17252.6Mb |
| >Q20 |
552393 (78.7%) 14773.0Mb |
| >Q25 |
296627 (42.3%) 7346.5Mb |
| >Q30 |
19918 (2.8%) 91.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
42.4 (2326) |
| 2 |
42.4 (1068) |
| 3 |
41.7 (1143) |
| 4 |
41.3 (1382) |
| 5 |
41.2 (1360) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
471387 (23.1) |
| 2 |
417050 (22.0) |
| 3 |
404965 (25.6) |
| 4 |
394461 (22.0) |
| 5 |
392376 (16.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots